Subsystem: D-ribose utilization
This subsystem's description is:
Variant codes:
A.123 – full Ribose utilization operon and Ribose 5-phosphate isomerase:
RbsK + RbsABCD transporter set + RbsR + RpiA, RpiB (or any one of them);
A.12 - RbsK + RpiA, RpiB (or any one of them) + any transporter set;
A.1 – RbsK + RpiA, RpiB (or any one of them) and some transport, as in Staphylococcus;
B – RbsK + RpiA, RpiB (or any one of them)
C - just Ribokinase (EC 2.7.1.15) - RbsK;
For more information, please check out the description and the additional notes tabs, below
Literature References | D-Allose catabolism of Escherichia coli: involvement of alsI and regulation of als regulon expression by allose and ribose. Poulsen TS Journal of bacteriology 1999 Nov | 10559180 | The D-allose operon of Escherichia coli K-12. Kim C Journal of bacteriology 1997 Dec | 9401019 |
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Diagram | Functional Roles | Subsystem Spreadsheet | Description | Additional Notes | Scenarios | |||||||||||||||||||
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Variant codes: A.123 – full Ribose utilization operon and Ribose 5-phosphate isomerase: RbsK + RbsABCD transporter set + RbsR + RpiA, RpiB (or any one of them); A.12 - RbsK + RpiA, RpiB (or any one of them) + any transporter set; A.1 – RbsK + RpiA, RpiB (or any one of them) and some transport, as in Staphylococcus; B – RbsK + RpiA, RpiB (or any one of them) C - just Ribokinase (EC 2.7.1.15) - RbsK; This subsystem was originally encoded by master:laikova. Ownership of the SS was changed 11/05/07 to OlgaZ for extending and further maintenance. =========================================== From ref.2: It is not surprising that allose and ribose transport systems are functionally redundant because D-ribose exists primarily as a pyranose form (80%) in solution, which is presumably responsible for interacting with the periplasmic binding protein and also with the membrane components. This configuration of D-ribose is structurally analogous to that of D-allose. Moreover, D-ribose can still be utilized when both the ribose and allose systems are absent, suggesting that other structurally related permeases provide the remaining activity of low-affinity transport. ========REFERENCES:========== 1. Poulsen TS, Chang YY, Hove-Jensen B. D-Allose catabolism of Escherichia coli: involvement of alsI and regulation of als regulon expression by allose and ribose.J Bacteriol. 1999 Nov;181(22):7126-30. PMID: 10559180 2. Kim C, Song S, Park C. The D-allose operon of Escherichia coli K-12. J Bacteriol. 1997 Dec;179(24):7631-7. PMID: 9401019 Currently selected organism: Anabaena variabilis ATCC 29413 (open scenarios overview page for organism)
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