Subsystem: One-carbon metabolism by tetrahydropterines

This subsystem's description is:

C1 metabolism is a key regulatory factor of catabolic and anabolic pathways. it provides a controlled flux through the C1 pool. It encompasses the transfer of C1 compounds and their reduction and oxidation.THF carries C1 units at the oxidation levels of formate( as 5-, or 10-formyl-THF,5,10-methenyl- or 5-formamino-THF), formaldehyde (as 5,10-methylene-THF) and methanol (as 5-methyl-THF).

For more information, please check out the description and the additional notes tabs, below

DiagramFunctional RolesSubsystem SpreadsheetDescriptionAdditional NotesScenarios 

Oops! We thought there was a diagram here, but we can't find it. Sorry

Group Alias
Abbrev.Functional RoleReactionsScenario ReactionsGOLiterature
SubsetsColoring
collapsed
expanded


  
display  items per page
«first  «prevdisplaying 1 - 1074 of 1074next»  last»
Taxonomy Pattern 
Organism 
Domain
Variant [?] 
active
*Mtdfch*folDftfLFTFDMTFRCD*FTCL
«first  «prevdisplaying 1 - 1074 of 1074next»  last»
C1 metabolism is a key regulatory factor of catabolic and anabolic pathways. it provides a controlled flux through the C1 pool. It encompasses the transfer of C1 compounds and their reduction and oxidation.THF carries C1 units at the oxidation levels of formate( as 5-, or 10-formyl-THF,5,10-methenyl- or 5-formamino-THF), formaldehyde (as 5,10-methylene-THF) and methanol (as 5-methyl-THF).
Overview:

The origin of the C1 units entering at the various levels are:
1:formyl-THF:formate (Formate-THFligase)
2:5-formimino-THF: degradation products of histidine (glutamate formamino transferase) and xanthine .Formamino-THF cyclodeaminase is ina related pathway
3:5,10-methylene-THF: serine, betaine degradation products.
C1 units are provided by:
1:10-formyl-THF: for purine and N-formylmethionyl-tRNA formation
3:5,10-methylene-THF: for biosyntheses of thymidine-5'P, coenzymeA and serine
2:5-methyl-THF: for methionine biosynthesis.
The revirsible interconversions of C1 compounds take place by formate-THF ligase, methenyl-TNF cyclohydrolase and methylene-THF dehydrogenase. In anymals they are combined intyo a trifunctional enzyme. In bacteria several different combinations of encoding of these functin are noticed.
The enzymes converting methylene-THF to formyl-THF, methylene-THF dehydrogenase, and methenyl-THF cyclohydrolase are encoded by genes (mtdA and fch)unique to methylotrophs, while in most known bacteria, both reactions are performed by a bifunctional enzyme encoded by folD. While mtdA and fch are cotranscribed and are a part of the serine cycle gene cluster, the gene encoding formyl-THF ligase (ftfL) is located elsewhere on the M. extorquens AM1 chromosome, and the encoded polypeptide shows high similarity to known formyl-THF ligases.

Good overview on methylotrophs: http://www.pubmedcentral.gov/articlerender.fcgi?tool=pmcentrez&artid=154073.
http://jb.asm.org/cgi/content/full/184/6/1750?view=long&pmid=11872727
http://www.pubmedcentral.gov/pagerender.fcgi?artid=246091&pageindex=2#page
http://jb.asm.org/cgi/content/full/187/4/1523#F1
Pseudomonas C1-assimilation via glyoxylate cycle:http://www.pubmedcentral.gov/pagerender.fcgi?artid=246141&pageindex=5

Serine hydroxymethyltransferase (GlyA)(look in 'Serine-glyoxylate cycle' SS ) is a traditional enzyme found in most known organisms, where it functions in supplying C1 units in the form of methylene-THF for biosynthetic pathways, for instance, purine biosynthesis. It may play role of Threonine aldolase (see 'Threonine degradation' SS) in some organisms.

Variant code: the most conservative patterns of functions involved in one-carbone metabolism by tetrahydropterines.
3,6-one or two stages of methanogenesis (or methylen degradation in case of Burkholderia) pathway are present.
Presence of FTCL: biosynthesis of 5,10-methenyl-THF de-Novo

Currently selected organism: Anabaena variabilis ATCC 29413 (open scenarios overview page for organism)



ScenarioInput CompoundsOutput CompoundsPaint on MapStatus in 240292.3



One carbon pool by folate (link to KEGG)Reactions not in Maps 
ReactionReactantsProductsIn ScenariosIn Organism